Yes. zero is on the centre line and all moves from there are positive as you move away, only time you should really be in a negative value on X is when you have moved past centre.
Possibly you need to reverse the X axis and then at the same time reverse the joystick(if thats possible as I have never had one). To see if this is the case move your X via the MDI line. For example if you are at X2 in the DRO do a MDI of G0X3 , it should move up the way, if it moves down then you need to reverse as above.
Hood