MojsterMiha,
I just downloaded your xml file today and had a quick look at it nothing seemed out of place.
Scratch test is not what you did in the previous post. Get the write up I did on threading as it has lots of
info that i am not going to repeat because that is the reason I wrote it.
From your pic of the cut thread seems that your depth of cut was too deep, slow down took place or you lost control, the controller can only slow down and not speed up, it tries to save the thread and modifies the feed rate on the following pathing.
Just do as Graham said doing scratch tests. Slow spindle speed down, try 50, 100, 150 instead of 250. When you use the Wizard it will say if you are exceeding axis capability ( not some pop up error) in the right hand corner of the screen.
What happens when you do a G1 Z********* Fx move at the threaging feed rates you are going to use and just scribing a cut into the material. Should be constant movement , not vibrating!
Also do you have backlash in the X axis, noticed that in the xml but also that compensation was not active. Backlash is a real PITA if you are trying to do threading.
RICH