Dan, just read your PM and was about to reply but saw you had posted here so might as well also reply here.
Lathes spindles can be a real PITA to tune and I am really needing to redo mine since I added the chucking cyl;inder.
Anyway, AutoTune has never really worked that great for me, I have found that I need to set 50% or more for the current in auto tuning to get it to even work and setting nearer 100% gave best results.
Now to your buzzing, mess with your filter, it defaults to 150 but I have found I usually need to alter that, on some spindles I need more and some a lot less, I have only 1 on the lathes spindle and I think on the Beavers spindle I have 200 so mess about and see but I reckon you may have to go lower, try 20 for a start.
Hood